Detailed information of SNP:
|
SNP ID:
sf1222269400(Gbrowse)
Chromosome: chr12 Position: 22269400 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1316 | 64.44% | 35.56% |
| All Indica | 722 | 40.17% | 59.83% |
| All Japonica | 484 | 97.52% | 2.48% |
| Aus | 58 | 65.52% | 34.48% |
| Indica I | 336 | 33.63% | 66.37% |
| Indica II | 189 | 43.39% | 56.61% |
| Indica Intermediate | 197 | 48.22% | 51.78% |
| Temperate Japonica | 323 | 98.76% | 1.24% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222269400 | T->C | INTERGENIC | None |