Detailed information of SNP:
|
SNP ID:
sf1222269414(Gbrowse)
Chromosome: chr12 Position: 22269414 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1343 | 80.19% | 19.81% |
| All Indica | 727 | 64.79% | 35.21% |
| All Japonica | 494 | 99.60% | 0.40% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 325 | 54.77% | 45.23% |
| Indica II | 204 | 74.02% | 25.98% |
| Indica Intermediate | 198 | 71.72% | 28.28% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222269414 | G->A | INTERGENIC | None |