Detailed information of SNP:
|
SNP ID:
sf1222271480(Gbrowse)
Chromosome: chr12 Position: 22271480 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1402 | 90.66% | 9.34% |
| All Indica | 784 | 89.80% | 10.20% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 34.85% | 65.15% |
| Indica I | 375 | 87.47% | 12.53% |
| Indica II | 199 | 91.96% | 8.04% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222271480 | T->C | INTERGENIC | None |