Detailed information of SNP:
|
SNP ID:
sf1222288249(Gbrowse)
Chromosome: chr12 Position: 22288249 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 93.19% | 6.81% |
| All Indica | 798 | 95.49% | 4.51% |
| All Japonica | 489 | 93.05% | 6.95% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 333 | 96.40% | 3.60% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 63 | 69.84% | 30.16% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222288249 | G->A | LOC_Os12g36480(LOC_Os12g36480.1) | Synonymous |