Detailed information of SNP:
|
SNP ID:
sf1222296381(Gbrowse)
Chromosome: chr12 Position: 22296381 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 88.23% | 11.77% |
| All Indica | 799 | 83.35% | 16.65% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 88.00% | 12.00% |
| Indica II | 213 | 69.48% | 30.52% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222296381 | G->C | LOC_Os12g36490(LOC_Os12g36490.1) | Non-Synonymous SNP |