Detailed information of SNP:
|
SNP ID:
sf1222315968(Gbrowse)
Chromosome: chr12 Position: 22315968 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 94.62% | 5.38% |
| All Indica | 792 | 99.62% | 0.38% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 207 | 99.03% | 0.97% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 93.13% | 6.87% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222315968 | G->A | INTERGENIC | None |