Detailed information of SNP:
|
SNP ID:
sf1222331779(Gbrowse)
Chromosome: chr12 Position: 22331779 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 66.48% | 33.52% |
| All Indica | 797 | 49.18% | 50.82% |
| All Japonica | 497 | 87.93% | 12.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 48.40% | 51.60% |
| Indica II | 213 | 39.44% | 60.56% |
| Indica Intermediate | 210 | 60.48% | 39.52% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222331779 | A->G | LOC_Os12g36520(LOC_Os12g36520.1) | INTRON |