Detailed information of SNP:
|
SNP ID:
sf1222336844(Gbrowse)
Chromosome: chr12 Position: 22336844 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 68.66% | 31.34% |
| All Indica | 789 | 49.56% | 50.44% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 48.80% | 51.20% |
| Indica II | 207 | 38.65% | 61.35% |
| Indica Intermediate | 207 | 61.84% | 38.16% |
| Temperate Japonica | 335 | 92.54% | 7.46% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222336844 | T->C | INTERGENIC | None |