Detailed information of SNP:
|
SNP ID:
sf1222339377(Gbrowse)
Chromosome: chr12 Position: 22339377 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 92.61% | 7.39% |
| All Indica | 792 | 94.70% | 5.30% |
| All Japonica | 486 | 94.24% | 5.76% |
| Aus | 63 | 69.84% | 30.16% |
| Indica I | 373 | 92.49% | 7.51% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 206 | 94.17% | 5.83% |
| Temperate Japonica | 327 | 95.11% | 4.89% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 66 | 84.85% | 15.15% |
| Group VI/Aromatic | 12 | 8.33% | 91.67% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222339377 | A->G | LOC_Os12g36530(LOC_Os12g36530.1) | INTRON |