Detailed information of SNP:
|
SNP ID:
sf1222357440(Gbrowse)
Chromosome: chr12 Position: 22357440 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1363 | 71.17% | 28.83% |
| All Indica | 765 | 59.48% | 40.52% |
| All Japonica | 478 | 92.68% | 7.32% |
| Aus | 64 | 42.19% | 57.81% |
| Indica I | 368 | 63.32% | 36.68% |
| Indica II | 203 | 55.17% | 44.83% |
| Indica Intermediate | 194 | 56.70% | 43.30% |
| Temperate Japonica | 326 | 97.24% | 2.76% |
| Tropical Japonica | 86 | 76.74% | 23.26% |
| Japonica Intermediate | 66 | 90.91% | 9.09% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222357440 | G->A | LOC_Os12g36570(LOC_Os12g36570.1) | INTRON |