Detailed information of SNP:
|
SNP ID:
sf1222365437(Gbrowse)
Chromosome: chr12 Position: 22365437 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 61.95% | 38.05% |
| All Indica | 797 | 45.92% | 54.08% |
| All Japonica | 497 | 87.93% | 12.07% |
| Aus | 65 | 44.62% | 55.38% |
| Indica I | 375 | 44.27% | 55.73% |
| Indica II | 212 | 48.58% | 51.42% |
| Indica Intermediate | 210 | 46.19% | 53.81% |
| Temperate Japonica | 335 | 92.24% | 7.76% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222365437 | G->T | INTERGENIC | None |