Detailed information of SNP:
|
SNP ID:
sf1222365483(Gbrowse)
Chromosome: chr12 Position: 22365483 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 57.84% | 42.16% |
| All Indica | 796 | 39.20% | 60.80% |
| All Japonica | 497 | 87.93% | 12.07% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 373 | 44.24% | 55.76% |
| Indica II | 212 | 25.94% | 74.06% |
| Indica Intermediate | 211 | 43.60% | 56.40% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222365483 | T->G | INTERGENIC | None |