Detailed information of SNP:
|
SNP ID:
sf1222365824(Gbrowse)
Chromosome: chr12 Position: 22365824 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 57.79% | 42.21% |
| All Indica | 799 | 39.05% | 60.95% |
| All Japonica | 497 | 88.13% | 11.87% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 44.00% | 56.00% |
| Indica II | 213 | 25.82% | 74.18% |
| Indica Intermediate | 211 | 43.60% | 56.40% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222365824 | C->T | INTERGENIC | None |