Detailed information of SNP:
|
SNP ID:
sf1222367076(Gbrowse)
Chromosome: chr12 Position: 22367076 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 66.34% | 33.66% |
| All Indica | 796 | 61.68% | 38.32% |
| All Japonica | 496 | 76.41% | 23.59% |
| Aus | 66 | 60.61% | 39.39% |
| Indica I | 375 | 56.00% | 44.00% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 208 | 59.13% | 40.87% |
| Temperate Japonica | 335 | 76.12% | 23.88% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222367076 | A->G | INTERGENIC | None |