Detailed information of SNP:



SNP ID: sf1222370362(Gbrowse)

Chromosome: chr12

Position: 22370362
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 82.07% 17.93%
All Indica797 69.39% 30.61%
All Japonica497 99.80% 0.20%
Aus67 97.01% 2.99%
Indica I374 64.71% 35.29%
Indica II213 77.00% 23.00%
Indica Intermediate210 70.00% 30.00%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 83.33% 16.67%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1222370362 C->T LOC_Os12g36590(LOC_Os12g36590.1) Non-Synonymous SNP