Detailed information of SNP:
|
SNP ID:
sf1222370362(Gbrowse)
Chromosome: chr12 Position: 22370362 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 82.07% | 17.93% |
| All Indica | 797 | 69.39% | 30.61% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 64.71% | 35.29% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 210 | 70.00% | 30.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222370362 | C->T | LOC_Os12g36590(LOC_Os12g36590.1) | Non-Synonymous SNP |