Detailed information of SNP:
|
SNP ID:
sf1222373738(Gbrowse)
Chromosome: chr12 Position: 22373738 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1347 | 79.21% | 20.79% |
| All Indica | 732 | 63.80% | 36.20% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 330 | 57.58% | 42.42% |
| Indica II | 200 | 71.00% | 29.00% |
| Indica Intermediate | 202 | 66.83% | 33.17% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222373738 | C->T | LOC_Os12g36590(LOC_Os12g36590.1) | Synonymous |