Detailed information of SNP:
|
SNP ID:
sf1222377113(Gbrowse)
Chromosome: chr12 Position: 22377113 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 72.82% | 27.18% |
| All Indica | 794 | 55.16% | 44.84% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 370 | 46.22% | 53.78% |
| Indica II | 213 | 64.79% | 35.21% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222377113 | T->C | LOC_Os12g36590(LOC_Os12g36590.1) | INTRON |