Detailed information of SNP:
|
SNP ID:
sf1222383296(Gbrowse)
Chromosome: chr12 Position: 22383296 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1337 | 80.70% | 19.30% |
| All Indica | 727 | 65.89% | 34.11% |
| All Japonica | 494 | 99.80% | 0.20% |
| Aus | 62 | 96.77% | 3.23% |
| Indica I | 330 | 59.39% | 40.61% |
| Indica II | 197 | 74.11% | 25.89% |
| Indica Intermediate | 200 | 68.50% | 31.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 82.50% | 17.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222383296 | T->G | INTERGENIC | None |