Detailed information of SNP:
|
SNP ID:
sf1222386377(Gbrowse)
Chromosome: chr12 Position: 22386377 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 64.54% | 35.46% |
| All Indica | 791 | 49.56% | 50.44% |
| All Japonica | 497 | 88.73% | 11.27% |
| Aus | 66 | 46.97% | 53.03% |
| Indica I | 370 | 49.46% | 50.54% |
| Indica II | 212 | 50.47% | 49.53% |
| Indica Intermediate | 209 | 48.80% | 51.20% |
| Temperate Japonica | 335 | 92.24% | 7.76% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222386377 | C->T | LOC_Os12g36620(LOC_Os12g36620.1) | INTRON |