Detailed information of SNP:
|
SNP ID:
sf1222386393(Gbrowse)
Chromosome: chr12 Position: 22386393 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 68.15% | 31.85% |
| All Indica | 799 | 62.58% | 37.42% |
| All Japonica | 497 | 80.68% | 19.32% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 375 | 56.27% | 43.73% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 81.49% | 18.51% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 60.29% | 39.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222386393 | T->G | LOC_Os12g36620(LOC_Os12g36620.1) | INTRON |