Detailed information of SNP:
|
SNP ID:
sf1222399707(Gbrowse)
Chromosome: chr12 Position: 22399707 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1319 | 83.24% | 16.76% |
| All Indica | 788 | 90.86% | 9.14% |
| All Japonica | 411 | 66.42% | 33.58% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 372 | 90.86% | 9.14% |
| Indica II | 211 | 91.94% | 8.06% |
| Indica Intermediate | 205 | 89.76% | 10.24% |
| Temperate Japonica | 276 | 54.71% | 45.29% |
| Tropical Japonica | 77 | 90.91% | 9.09% |
| Japonica Intermediate | 58 | 89.66% | 10.34% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222399707 | A->G | INTERGENIC | None |