Detailed information of SNP:
|
SNP ID:
sf1222405078(Gbrowse)
Chromosome: chr12 Position: 22405078 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 73.73% | 26.27% |
| All Indica | 798 | 65.04% | 34.96% |
| All Japonica | 497 | 87.53% | 12.47% |
| Aus | 65 | 60.00% | 40.00% |
| Indica I | 374 | 71.12% | 28.88% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 45.50% | 54.50% |
| Temperate Japonica | 335 | 88.36% | 11.64% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222405078 | T->G | INTERGENIC | None |