Detailed information of SNP:
|
SNP ID:
sf1222405238(Gbrowse)
Chromosome: chr12 Position: 22405238 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 84.45% | 15.55% |
| All Indica | 795 | 81.51% | 18.49% |
| All Japonica | 497 | 94.16% | 5.84% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 372 | 64.52% | 35.48% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222405238 | T->C | INTERGENIC | None |