Detailed information of SNP:



SNP ID: sf1222405238(Gbrowse)

Chromosome: chr12

Position: 22405238
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1415 84.45% 15.55%
All Indica795 81.51% 18.49%
All Japonica497 94.16% 5.84%
Aus67 65.67% 34.33%
Indica I372 64.52% 35.48%
Indica II213 98.12% 1.88%
Indica Intermediate210 94.76% 5.24%
Temperate Japonica335 97.91% 2.09%
Tropical Japonica94 93.62% 6.38%
Japonica Intermediate68 76.47% 23.53%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 83.33% 16.67%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1222405238 T->C INTERGENIC None