Detailed information of SNP:
|
SNP ID:
sf1222418264(Gbrowse)
Chromosome: chr12 Position: 22418264 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 85.45% | 14.55% |
| All Indica | 786 | 75.45% | 24.55% |
| All Japonica | 472 | 98.94% | 1.06% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 78.98% | 21.02% |
| Indica II | 210 | 68.57% | 31.43% |
| Indica Intermediate | 205 | 76.10% | 23.90% |
| Temperate Japonica | 314 | 98.73% | 1.27% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222418264 | G->A | INTERGENIC | None |