Detailed information of SNP:
|
SNP ID:
sf1222421605(Gbrowse)
Chromosome: chr12 Position: 22421605 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 85.12% | 14.88% |
| All Indica | 793 | 82.47% | 17.53% |
| All Japonica | 490 | 94.69% | 5.31% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 370 | 67.30% | 32.70% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 330 | 96.06% | 3.94% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 66 | 86.36% | 13.64% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222421605 | A->G | INTERGENIC | None |