Detailed information of SNP:
|
SNP ID:
sf1222423116(Gbrowse)
Chromosome: chr12 Position: 22423116 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 57.93% | 42.07% |
| All Indica | 772 | 41.45% | 58.55% |
| All Japonica | 494 | 84.82% | 15.18% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 363 | 62.53% | 37.47% |
| Indica II | 206 | 17.48% | 82.52% |
| Indica Intermediate | 203 | 28.08% | 71.92% |
| Temperate Japonica | 332 | 88.25% | 11.75% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222423116 | A->G | INTERGENIC | None |