Detailed information of SNP:
|
SNP ID:
sf1222427352(Gbrowse)
Chromosome: chr12 Position: 22427352 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1391 | 98.49% | 1.51% |
| All Indica | 773 | 97.28% | 2.72% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 363 | 95.87% | 4.13% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 199 | 98.99% | 1.01% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222427352 | G->A | LOC_Os12g36670(LOC_Os12g36670.1) | Non-Synonymous SNP |