Detailed information of SNP:
|
SNP ID:
sf1222431576(Gbrowse)
Chromosome: chr12 Position: 22431576 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 81.89% | 18.11% |
| All Indica | 791 | 71.30% | 28.70% |
| All Japonica | 494 | 94.94% | 5.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 80.32% | 19.68% |
| Indica II | 211 | 65.40% | 34.60% |
| Indica Intermediate | 209 | 61.24% | 38.76% |
| Temperate Japonica | 333 | 93.99% | 6.01% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222431576 | T->C | INTERGENIC | None |