Detailed information of SNP:
|
SNP ID:
sf1222445209(Gbrowse)
Chromosome: chr12 Position: 22445209 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 75.14% | 24.86% |
| All Indica | 788 | 60.41% | 39.59% |
| All Japonica | 497 | 94.16% | 5.84% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 372 | 73.66% | 26.34% |
| Indica II | 209 | 52.63% | 47.37% |
| Indica Intermediate | 207 | 44.44% | 55.56% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222445209 | C->T | LOC_Os12g36690(LOC_Os12g36690.1) | Non-Synonymous SNP |