Detailed information of SNP:
|
SNP ID:
sf1222451304(Gbrowse)
Chromosome: chr12 Position: 22451304 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 88.31% | 11.69% |
| All Indica | 793 | 83.86% | 16.14% |
| All Japonica | 497 | 93.56% | 6.44% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 89.33% | 10.67% |
| Indica II | 207 | 80.68% | 19.32% |
| Indica Intermediate | 211 | 77.25% | 22.75% |
| Temperate Japonica | 335 | 92.54% | 7.46% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222451304 | G->A | INTERGENIC | None |