Detailed information of SNP:
|
SNP ID:
sf1222452530(Gbrowse)
Chromosome: chr12 Position: 22452530 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 91.95% | 8.05% |
| All Indica | 784 | 85.97% | 14.03% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 85.79% | 14.21% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 205 | 74.63% | 25.37% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222452530 | C->T | INTERGENIC | None |