Detailed information of SNP:
|
SNP ID:
sf1222453613(Gbrowse)
Chromosome: chr12 Position: 22453613 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 89.84% | 10.16% |
| All Indica | 778 | 82.13% | 17.87% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 360 | 84.17% | 15.83% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 206 | 71.36% | 28.64% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222453613 | A->G | INTERGENIC | None |