Detailed information of SNP:
|
SNP ID:
sf1222454852(Gbrowse)
Chromosome: chr12 Position: 22454852 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1389 | 80.42% | 19.58% |
| All Indica | 775 | 70.58% | 29.42% |
| All Japonica | 492 | 92.28% | 7.72% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 365 | 63.56% | 36.44% |
| Indica II | 209 | 94.74% | 5.26% |
| Indica Intermediate | 201 | 58.21% | 41.79% |
| Temperate Japonica | 330 | 91.21% | 8.79% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222454852 | A->C | LOC_Os12g36720(LOC_Os12g36720.1) | INTRON |