Detailed information of SNP:
|
SNP ID:
sf1222455105(Gbrowse)
Chromosome: chr12 Position: 22455105 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1342 | 89.64% | 10.36% |
| All Indica | 726 | 81.13% | 18.87% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 356 | 75.84% | 24.16% |
| Indica II | 172 | 95.93% | 4.07% |
| Indica Intermediate | 198 | 77.78% | 22.22% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222455105 | C->T | LOC_Os12g36720(LOC_Os12g36720.1) | UTR_3_PRIME |