Detailed information of SNP:
|
SNP ID:
sf1222455251(Gbrowse)
Chromosome: chr12 Position: 22455251 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 83.48% | 16.52% |
| All Indica | 792 | 82.32% | 17.68% |
| All Japonica | 497 | 89.13% | 10.87% |
| Aus | 66 | 50.00% | 50.00% |
| Indica I | 369 | 76.96% | 23.04% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 77.62% | 22.38% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222455251 | T->C | LOC_Os12g36720(LOC_Os12g36720.1) | UTR_3_PRIME |