Detailed information of SNP:
|
SNP ID:
sf1222456618(Gbrowse)
Chromosome: chr12 Position: 22456618 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1373 | 85.00% | 15.00% |
| All Indica | 755 | 81.32% | 18.68% |
| All Japonica | 495 | 92.53% | 7.47% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 368 | 84.51% | 15.49% |
| Indica II | 191 | 73.30% | 26.70% |
| Indica Intermediate | 196 | 83.16% | 16.84% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222456618 | C->T | LOC_Os12g36720(LOC_Os12g36720.1) | Non-Synonymous SNP |