Detailed information of SNP:
|
SNP ID:
sf1222456925(Gbrowse)
Chromosome: chr12 Position: 22456925 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 79.60% | 20.40% |
| All Indica | 777 | 63.96% | 36.04% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 79.05% | 20.95% |
| Indica II | 211 | 47.39% | 52.61% |
| Indica Intermediate | 208 | 54.81% | 45.19% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222456925 | T->C | LOC_Os12g36720(LOC_Os12g36720.1) | Non-Synonymous SNP |