Detailed information of SNP:
|
SNP ID:
sf1222473305(Gbrowse)
Chromosome: chr12 Position: 22473305 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 93.75% | 6.25% |
| All Indica | 796 | 89.45% | 10.55% |
| All Japonica | 488 | 99.39% | 0.61% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 85.56% | 14.44% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 86.60% | 13.40% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 88 | 98.86% | 1.14% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222473305 | G->A | INTERGENIC | None |