Detailed information of SNP:
|
SNP ID:
sf1222527634(Gbrowse)
Chromosome: chr12 Position: 22527634 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1367 | 94.81% | 5.19% |
| All Indica | 748 | 90.64% | 9.36% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 92.74% | 7.26% |
| Indica II | 201 | 89.55% | 10.45% |
| Indica Intermediate | 189 | 87.83% | 12.17% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222527634 | C->T | INTERGENIC | None |