Detailed information of SNP:
|
SNP ID:
sf1222527650(Gbrowse)
Chromosome: chr12 Position: 22527650 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1343 | 92.03% | 7.97% |
| All Indica | 724 | 85.77% | 14.23% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 347 | 89.34% | 10.66% |
| Indica II | 195 | 84.62% | 15.38% |
| Indica Intermediate | 182 | 80.22% | 19.78% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222527650 | T->G | INTERGENIC | None |