Detailed information of SNP:
|
SNP ID:
sf1222545946(Gbrowse)
Chromosome: chr12 Position: 22545946 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 75.81% | 24.19% |
| All Indica | 798 | 58.40% | 41.60% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 73.87% | 26.13% |
| Indica II | 213 | 36.15% | 63.85% |
| Indica Intermediate | 210 | 53.33% | 46.67% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222545946 | T->A | INTERGENIC | None |