Detailed information of SNP:
|
SNP ID:
sf1222553083(Gbrowse)
Chromosome: chr12 Position: 22553083 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 95.41% | 4.59% |
| All Indica | 798 | 97.37% | 2.63% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 65 | 61.54% | 38.46% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222553083 | C->T | INTERGENIC | None |