Detailed information of SNP:
|
SNP ID:
sf1222601210(Gbrowse)
Chromosome: chr12 Position: 22601210 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 94.88% | 5.12% |
| All Indica | 769 | 91.42% | 8.58% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 51 | 94.12% | 5.88% |
| Indica I | 359 | 90.81% | 9.19% |
| Indica II | 209 | 98.56% | 1.44% |
| Indica Intermediate | 201 | 85.07% | 14.93% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222601210 | G->A | INTERGENIC | None |