Detailed information of SNP:
|
SNP ID:
sf1222610946(Gbrowse)
Chromosome: chr12 Position: 22610946 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1243 | 95.74% | 4.26% |
| All Indica | 752 | 99.73% | 0.27% |
| All Japonica | 381 | 86.61% | 13.39% |
| Aus | 59 | 100.00% | 0.00% |
| Indica I | 331 | 99.40% | 0.60% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 261 | 81.99% | 18.01% |
| Tropical Japonica | 71 | 100.00% | 0.00% |
| Japonica Intermediate | 49 | 91.84% | 8.16% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222610946 | A->T | INTERGENIC | None |