Detailed information of SNP:
|
SNP ID:
sf1222622793(Gbrowse)
Chromosome: chr12 Position: 22622793 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 93.38% | 6.62% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 92.27% | 7.73% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222622793 | C->T | INTERGENIC | None |