Detailed information of SNP:
|
SNP ID:
sf1222709918(Gbrowse)
Chromosome: chr12 Position: 22709918 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1352 | 96.75% | 3.25% |
| All Indica | 733 | 94.13% | 5.87% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 355 | 96.62% | 3.38% |
| Indica II | 201 | 93.53% | 6.47% |
| Indica Intermediate | 177 | 89.83% | 10.17% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222709918 | C->T | LOC_Os12g37120(LOC_Os12g37120.1) | Non-Synonymous SNP |