Detailed information of SNP:
|
SNP ID:
sf1222780898(Gbrowse)
Chromosome: chr12 Position: 22780898 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1332 | 98.12% | 1.88% |
| All Indica | 713 | 96.49% | 3.51% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 351 | 98.29% | 1.71% |
| Indica II | 194 | 94.85% | 5.15% |
| Indica Intermediate | 168 | 94.64% | 5.36% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222780898 | G->A | LOC_Os12g37200(LOC_Os12g37200.1) | INTRON |