Detailed information of SNP:
|
SNP ID:
sf1222788633(Gbrowse)
Chromosome: chr12 Position: 22788633 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1293 | 94.66% | 5.34% |
| All Indica | 741 | 99.73% | 0.27% |
| All Japonica | 443 | 85.78% | 14.22% |
| Aus | 59 | 100.00% | 0.00% |
| Indica I | 334 | 100.00% | 0.00% |
| Indica II | 207 | 99.03% | 0.97% |
| Indica Intermediate | 200 | 100.00% | 0.00% |
| Temperate Japonica | 304 | 99.34% | 0.66% |
| Tropical Japonica | 84 | 45.24% | 54.76% |
| Japonica Intermediate | 55 | 72.73% | 27.27% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 88.89% | 11.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222788633 | G->A | INTERGENIC | None |