Detailed information of SNP:
|
SNP ID:
sf1222829925(Gbrowse)
Chromosome: chr12 Position: 22829925 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 77.21% | 22.79% |
| All Indica | 793 | 60.66% | 39.34% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 81.55% | 18.45% |
| Indica II | 209 | 33.49% | 66.51% |
| Indica Intermediate | 210 | 50.48% | 49.52% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222829925 | A->G | INTERGENIC | None |