Detailed information of SNP:
|
SNP ID:
sf1222843023(Gbrowse)
Chromosome: chr12 Position: 22843023 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1229 | 51.91% | 48.09% |
| All Indica | 736 | 28.26% | 71.74% |
| All Japonica | 382 | 88.48% | 11.52% |
| Aus | 60 | 90.00% | 10.00% |
| Indica I | 316 | 55.38% | 44.62% |
| Indica II | 212 | 6.60% | 93.40% |
| Indica Intermediate | 208 | 9.13% | 90.87% |
| Temperate Japonica | 250 | 84.80% | 15.20% |
| Tropical Japonica | 80 | 97.50% | 2.50% |
| Japonica Intermediate | 52 | 92.31% | 7.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 64.86% | 35.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1222843023 | A->T | LOC_Os12g37280(LOC_Os12g37280.1) | INTRON |